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LOC107870708 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5 [ Capsicum annuum ]

Gene ID: 107870708, updated on 30-Nov-2023

Summary

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Gene symbol
LOC107870708
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsicum annuum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Genomic context

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See LOC107870708 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
101 current UCD10Xv1.1 (GCF_002878395.1) 1 NC_061111.1 (18613823..18621039, complement)
100 previous assembly Pepper Zunla 1 Ref_v1.0 (GCF_000710875.1) 1 NC_029977.1 (29182719..29189783)

Chromosome 1 - NC_061111.1Genomic Context describing neighboring genes Neighboring gene uncharacterized membrane protein At4g09580 Neighboring gene RNA-binding protein 34 Neighboring gene BON1-associated protein 2-like Neighboring gene probable aspartic proteinase GIP2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsicum annuum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCD10Xv1.1 Primary Assembly

Genomic

  1. NC_061111.1 Reference UCD10Xv1.1 Primary Assembly

    Range
    18613823..18621039 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047394785.1 → XP_047250741.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

  2. XM_047394789.1 → XP_047250745.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

  3. XM_016717320.2 → XP_016572806.2  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

  4. XM_016717328.2 → XP_016572814.2  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

  5. XM_047394773.1 → XP_047250729.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

  6. XM_047394780.1 → XP_047250736.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

  7. XM_016717329.2 → XP_016572815.2  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

  8. XM_047394782.1 → XP_047250738.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

  9. XM_047394776.1 → XP_047250732.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

Nucleotide Protein
Heading Accession and Version

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