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LOC107867033 arabinosyltransferase RRA3 [ Capsicum annuum ]

Gene ID: 107867033, updated on 30-Nov-2023

Summary

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Gene symbol
LOC107867033
Gene description
arabinosyltransferase RRA3
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsicum annuum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Genomic context

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See LOC107867033 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
101 current UCD10Xv1.1 (GCF_002878395.1) 4 NC_061114.1 (225753607..225756774)
100 previous assembly Pepper Zunla 1 Ref_v1.0 (GCF_000710875.1) 4 NC_029980.1 (6079692..6082829)

Chromosome 4 - NC_061114.1Genomic Context describing neighboring genes Neighboring gene defensin-like protein 1 Neighboring gene defensin-like protein Neighboring gene APO protein 4, mitochondrial Neighboring gene SPX and EXS domain-containing protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in root hair cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arabinosyltransferase RRA3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsicum annuum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCD10Xv1.1 Primary Assembly

Genomic

  1. NC_061114.1 Reference UCD10Xv1.1 Primary Assembly

    Range
    225753607..225756774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016713121.2 → XP_016568607.1  arabinosyltransferase RRA3

    UniProtKB/TrEMBL
    A0A1U8GB99
    Conserved Domains (2) summary
    pfam03407
    Location:182 → 401
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase
    cl40461
    Location:72 → 98
    ZIP_TSC22D-like; leucine zipper found in the TSC22 domain leucine zipper transcription factors, c-Myc-binding protein, and similar proteins
Nucleotide Protein
Heading Accession and Version

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