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LOC107863219 beta-carotene hydroxylase 1, chloroplastic [ Capsicum annuum ]

Gene ID: 107863219, updated on 30-Nov-2023

Summary

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Gene symbol
LOC107863219
Gene description
beta-carotene hydroxylase 1, chloroplastic
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Capsicum annuum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Also known as
CA1; CrtZ-2; T459_09470
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Genomic context

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See LOC107863219 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
101 current UCD10Xv1.1 (GCF_002878395.1) 3 NC_061113.1 (221034848..221036872)
100 previous assembly Pepper Zunla 1 Ref_v1.0 (GCF_000710875.1) 3 NC_029979.1 (50218908..50221232, complement)

Chromosome 3 - NC_061113.1Genomic Context describing neighboring genes Neighboring gene vegetative cell wall protein gp1-like Neighboring gene uncharacterized LOC107866150 Neighboring gene cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3-like Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC124897074

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Induced mutation in β-CAROTENE HYDROXYLASE results in accumulation of β-carotene and conversion of red to orange color in pepper fruit. Borovsky Y, et al. Theor Appl Genet, 2013 Mar. PMID 23124390
  2. Xanthophyll biosynthesis: molecular and functional characterization of carotenoid hydroxylases from pepper fruits (Capsicum annuum L.). Bouvier F, et al. Biochim Biophys Acta, 1998 Apr 22. PMID 9555077

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carotene beta-ring hydroxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carotene metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xanthophyll biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-carotene hydroxylase 1, chloroplastic
Names
beta-carotene hydrolase
beta-carotene hydroxylase 2
NP_001311784.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001324855.1 → NP_001311784.1  beta-carotene hydroxylase 1, chloroplastic

    Status: PROVISIONAL

    Source sequence(s)
    JQ031264
    UniProtKB/Swiss-Prot
    A0A1U8FZA1, D7P8N7, O49815
    Conserved Domains (1) summary
    cl01132
    Location:1 → 314
    FA_hydroxylase; Fatty acid hydroxylase superfamily

RefSeqs of Annotated Genomes: Capsicum annuum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCD10Xv1.1 Primary Assembly

Genomic

  1. NC_061113.1 Reference UCD10Xv1.1 Primary Assembly

    Range
    221034848..221036872
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O49815.2 GenPept UniProtKB/Swiss-Prot:O49815

Gene LinkOut

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