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LOC107862473 hydroxyproline O-galactosyltransferase GALT6 [ Capsicum annuum ]

Gene ID: 107862473, updated on 30-Nov-2023

Summary

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Gene symbol
LOC107862473
Gene description
hydroxyproline O-galactosyltransferase GALT6
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsicum annuum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Genomic context

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See LOC107862473 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
101 current UCD10Xv1.1 (GCF_002878395.1) 3 NC_061113.1 (248873658..248877500)
100 previous assembly Pepper Zunla 1 Ref_v1.0 (GCF_000710875.1) 3 NC_029979.1 (17766383..17770093)

Chromosome 3 - NC_061113.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107862471 Neighboring gene transcription factor MYB35 Neighboring gene uncharacterized LOC107862474 Neighboring gene DDT domain-containing protein DDR4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsicum annuum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCD10Xv1.1 Primary Assembly

Genomic

  1. NC_061113.1 Reference UCD10Xv1.1 Primary Assembly

    Range
    248873658..248877500
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016708064.2 → XP_016563550.2  hydroxyproline O-galactosyltransferase GALT6 isoform X1

    UniProtKB/TrEMBL
    A0A2G3A1L1

  2. XM_016708065.2 → XP_016563551.2  hydroxyproline O-galactosyltransferase GALT6 isoform X2

Nucleotide Protein
Heading Accession and Version

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