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LOC107860527 granule-bound starch synthase 2, chloroplastic/amyloplastic [ Capsicum annuum ]

Gene ID: 107860527, updated on 18-Sep-2024

Summary

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Gene symbol
LOC107860527
Gene description
granule-bound starch synthase 2, chloroplastic/amyloplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsicum annuum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Genomic context

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See LOC107860527 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
101 current UCD10Xv1.1 (GCF_002878395.1) 2 NC_061112.1 (150281353..150287571, complement)
100 previous assembly Pepper Zunla 1 Ref_v1.0 (GCF_000710875.1) 2 NC_029978.1 (159705908..159711802, complement)

Chromosome 2 - NC_061112.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase RNF181-like Neighboring gene defective in cullin neddylation protein AAR3 Neighboring gene uncharacterized LOC107860529 Neighboring gene structural maintenance of chromosomes protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
granule-bound starch synthase 2, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsicum annuum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCD10Xv1.1 Primary Assembly

Genomic

  1. NC_061112.1 Reference UCD10Xv1.1 Primary Assembly

    Range
    150281353..150287571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016705911.2 → XP_016561397.1  granule-bound starch synthase 2, chloroplastic/amyloplastic

    UniProtKB/TrEMBL
    A0A1U8FQ92
    Conserved Domains (1) summary
    TIGR02095
    Location:275 → 759
    glgA; glycogen/starch synthase, ADP-glucose type
Nucleotide Protein
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