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LOC107856977 hydroxyproline O-arabinosyltransferase 1 [ Capsicum annuum ]

Gene ID: 107856977, updated on 30-Nov-2023

Summary

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Gene symbol
LOC107856977
Gene description
hydroxyproline O-arabinosyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsicum annuum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Genomic context

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See LOC107856977 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
101 current UCD10Xv1.1 (GCF_002878395.1) 8 NC_061118.1 (3759250..3764329)
100 previous assembly Pepper Zunla 1 Ref_v1.0 (GCF_000710875.1) Unplaced Scaffold NW_015961815.1 (1019960..1024350)

Chromosome 8 - NC_061118.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107856963 Neighboring gene uncharacterized LOC107856954 Neighboring gene uncharacterized LOC107856974 Neighboring gene synaptotagmin-5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-arabinosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsicum annuum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCD10Xv1.1 Primary Assembly

Genomic

  1. NC_061118.1 Reference UCD10Xv1.1 Primary Assembly

    Range
    3759250..3764329
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016701938.2 → XP_016557424.1  hydroxyproline O-arabinosyltransferase 1

    UniProtKB/TrEMBL
    A0A1U8FNT8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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