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LOC107855492 xyloglucan glycosyltransferase 4 [ Capsicum annuum ]

Gene ID: 107855492, updated on 30-Nov-2023

Summary

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Gene symbol
LOC107855492
Gene description
xyloglucan glycosyltransferase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsicum annuum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Genomic context

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See LOC107855492 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
101 current UCD10Xv1.1 (GCF_002878395.1) 2 NC_061112.1 (147690297..147693654)
100 previous assembly Pepper Zunla 1 Ref_v1.0 (GCF_000710875.1) Unplaced Scaffold NW_015961390.1 (349702..352884)

Chromosome 2 - NC_061112.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107855478 Neighboring gene uncharacterized LOC107855505 Neighboring gene proline dehydrogenase 2, mitochondrial Neighboring gene proline dehydrogenase 2, mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan glycosyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsicum annuum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCD10Xv1.1 Primary Assembly

Genomic

  1. NC_061112.1 Reference UCD10Xv1.1 Primary Assembly

    Range
    147690297..147693654
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016700509.2 → XP_016555995.1  xyloglucan glycosyltransferase 4

    UniProtKB/TrEMBL
    A0A1U8FJQ9
    Conserved Domains (1) summary
    cl11394
    Location:200 → 436
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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