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LOC107849722 beta-1,3-galactosyltransferase 7-like [ Capsicum annuum ]

Gene ID: 107849722, updated on 30-Nov-2023

Summary

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Gene symbol
LOC107849722
Gene description
beta-1,3-galactosyltransferase 7-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsicum annuum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Genomic context

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See LOC107849722 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
11
Annotation release Status Assembly Chr Location
101 current UCD10Xv1.1 (GCF_002878395.1) 12 NC_061122.1 (227080271..227084957)
100 previous assembly Pepper Zunla 1 Ref_v1.0 (GCF_000710875.1) 12 NC_029988.1 (8253933..8258535, complement)

Chromosome 12 - NC_061122.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase MBR1 Neighboring gene ubiquitin carboxyl-terminal hydrolase 18 Neighboring gene cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 Neighboring gene uncharacterized LOC107850907

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 7-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsicum annuum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCD10Xv1.1 Primary Assembly

Genomic

  1. NC_061122.1 Reference UCD10Xv1.1 Primary Assembly

    Range
    227080271..227084957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016694284.2 → XP_016549770.2  beta-1,3-galactosyltransferase 7-like

    UniProtKB/TrEMBL
    A0A2G2YAM5
Nucleotide Protein
Heading Accession and Version

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