U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC107844039 alpha-L-arabinofuranosidase 1 [ Capsicum annuum ]

Gene ID: 107844039, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC107844039
Gene description
alpha-L-arabinofuranosidase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsicum annuum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC107844039 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
20
Annotation release Status Assembly Chr Location
101 current UCD10Xv1.1 (GCF_002878395.1) 10 NC_061120.1 (221466691..221472175, complement)
100 previous assembly Pepper Zunla 1 Ref_v1.0 (GCF_000710875.1) 10 NC_029986.1 (205120190..205125656, complement)

Chromosome 10 - NC_061120.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107844043 Neighboring gene histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 Neighboring gene putative disease resistance protein RGA1 Neighboring gene alpha-L-arabinofuranosidase 1-like Neighboring gene histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 Neighboring gene probable protein S-acyltransferase 3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-L-arabinofuranosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
alpha-L-arabinofuranosidase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Capsicum annuum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCD10Xv1.1 Primary Assembly

Genomic

  1. NC_061120.1 Reference UCD10Xv1.1 Primary Assembly

    Range
    221466691..221472175 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047397564.1 → XP_047253520.1  alpha-L-arabinofuranosidase 1 isoform X1

  2. XM_016688509.2 → XP_016543995.1  alpha-L-arabinofuranosidase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2G2Y175

  3. XM_016688510.2 → XP_016543996.1  alpha-L-arabinofuranosidase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2G2Y175

  4. XM_016688511.2 → XP_016543997.1  alpha-L-arabinofuranosidase 1 isoform X2

    UniProtKB/TrEMBL
    A0A2G2Y175

  5. XM_016688512.2 → XP_016543998.1  alpha-L-arabinofuranosidase 1 isoform X3

    UniProtKB/TrEMBL
    A0A2G2Y175
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases