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LOC107832857 gastrula zinc finger protein XlCGF57.1-like [ Poecilia formosa (Amazon molly) ]

Gene ID: 107832857, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107832857
Gene description
gastrula zinc finger protein XlCGF57.1-like
See related
Ensembl:ENSPFOG00000004894
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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See LOC107832857 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006800920.1 (60366..71165, complement)

NW_006800920.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 260-like Neighboring gene piggyBac transposable element-derived protein 4-like Neighboring gene gastrula zinc finger protein XlCGF8.2DB-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006800920.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gastrula zinc finger protein XlCGF57.1-like; zinc finger protein 501-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006800920.1 Reference Poecilia_formosa-5.1.2

    Range
    60366..71165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007544046.2 → XP_007544108.1  gastrula zinc finger protein XlCGF57.1-like isoform X3

    Conserved Domains (4) summary
    COG5048
    Location:163 → 573
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:468 → 488
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:425 → 449
    zf-H2C2_2; Zinc-finger double domain
    cl12013
    Location:95 → 170
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

  2. XM_016667268.1 → XP_016522754.1  gastrula zinc finger protein XlCGF57.1-like isoform X1

  3. XM_016667270.1 → XP_016522756.1  zinc finger protein 501-like isoform X4

  4. XM_016667269.1 → XP_016522755.1  gastrula zinc finger protein XlCGF57.1-like isoform X2

    UniProtKB/TrEMBL
    A0A096MHR5
    Related
    ENSPFOP00000030956.1, ENSPFOT00000028304.1
Nucleotide Protein
Heading Accession and Version

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