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LOC107832287 callose synthase 7-like [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107832287, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107832287
Gene description
callose synthase 7-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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See LOC107832287 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
44
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015863215.1 (43988..65426)

NW_015863215.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At4g10955-like Neighboring gene transfer RNA arginine (anticodon ACG)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015863215.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 7-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015863215.1 Reference Ntab-TN90 Primary Assembly

    Range
    43988..65426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016660103.1 → XP_016515589.1  callose synthase 7-like isoform X3

    UniProtKB/TrEMBL
    A0A1S4DR33

  2. XM_016660101.1 → XP_016515587.1  callose synthase 7-like isoform X1

    UniProtKB/TrEMBL
    A0A1S4DQ84
    Conserved Domains (3) summary
    pfam02364
    Location:1030 → 1767
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:57 → 179
    Vta1; Vta1 like
    pfam14288
    Location:337 → 437
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  3. XM_016660102.1 → XP_016515588.1  callose synthase 7-like isoform X2

    UniProtKB/TrEMBL
    A0A1S4DQ88
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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