U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC107828004 probable beta-1,3-galactosyltransferase 4 [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107828004, updated on 28-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC107828004
Gene description
probable beta-1,3-galactosyltransferase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC107828004 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015849293.1 (1280..5962)

NW_015849293.1Genomic Context describing neighboring genes Neighboring gene CASP-like protein 2D1 Neighboring gene uncharacterized LOC107828006

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_015849293.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable beta-1,3-galactosyltransferase 4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015849293.1 Reference Ntab-TN90 Primary Assembly

    Range
    1280..5962
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016655254.1 → XP_016510740.1  probable beta-1,3-galactosyltransferase 4

    UniProtKB/TrEMBL
    A0A1S4DBD0
    Conserved Domains (3) summary
    PLN03193
    Location:5 → 398
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam13334
    Location:21 → 103
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:143 → 341
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases