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LOC107825688 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107825688, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107825688
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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See LOC107825688 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015841694.1 (26427..32020)

NW_015841694.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015841694.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015841694.1 Reference Ntab-TN90 Primary Assembly

    Range
    26427..32020
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016652571.1 → XP_016508057.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

    UniProtKB/TrEMBL
    A0A1S4D3R8
    Conserved Domains (3) summary
    cd03788
    Location:60 → 543
    GT1_TPS; Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a ...
    PLN02205
    Location:1 → 844
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
    pfam02358
    Location:593 → 827
    Trehalose_PPase; Trehalose-phosphatase

  2. XM_016652572.1 → XP_016508058.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

    UniProtKB/TrEMBL
    A0A1S4D3R8
    Conserved Domains (3) summary
    cd03788
    Location:60 → 543
    GT1_TPS; Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a ...
    PLN02205
    Location:1 → 844
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
    pfam02358
    Location:593 → 827
    Trehalose_PPase; Trehalose-phosphatase
Nucleotide Protein
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