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LOC107825584 acidic endochitinase [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107825584, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107825584
Gene description
acidic endochitinase
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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See LOC107825584 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015841335.1 (77244..78824, complement)

NW_015841335.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107825583 Neighboring gene acidic endochitinase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015841335.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Acidic and basic class III chitinase mRNA accumulation in response to TMV infection of tobacco. Lawton K, et al. Plant Mol Biol, 1992 Aug. PMID 1643280

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acidic endochitinase
Names
acidic chitinase III
XP_016507940.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001326153.1 → NP_001313082.1  acidic endochitinase precursor

    Status: PROVISIONAL

    Source sequence(s)
    Z11563
    UniProtKB/Swiss-Prot
    P29060, P82433
    UniProtKB/TrEMBL
    A0A1S4D3D0
    Conserved Domains (2) summary
    cd02877
    Location:23 → 289
    GH18_hevamine_XipI_class_III; This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that ...
    pfam00704
    Location:25 → 289
    Glyco_hydro_18; Glycosyl hydrolases family 18

RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015841335.1 Reference Ntab-TN90 Primary Assembly

    Range
    77244..78824 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016652454.1 → XP_016507940.1  acidic endochitinase

    Conserved Domains (2) summary
    cd02877
    Location:23 → 289
    GH18_hevamine_XipI_class_III; This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that ...
    pfam00704
    Location:25 → 289
    Glyco_hydro_18; Glycosyl hydrolases family 18
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P29060.1 GenPept UniProtKB/Swiss-Prot:P29060

Gene LinkOut

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Molecular Biology Databases