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LOC107822827 respiratory burst oxidase homolog protein A-like [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107822827, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107822827
Gene description
respiratory burst oxidase homolog protein A-like
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Also known as
rbohF
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Genomic context

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See LOC107822827 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015832405.1 (24665..36582)

NW_015832405.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015832405.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD(P)H oxidase H2O2-forming activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peroxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
respiratory burst oxidase homolog protein A-like
Names
NADPH oxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001326106.1 → NP_001313035.1  respiratory burst oxidase homolog protein A-like

    Status: PROVISIONAL

    Source sequence(s)
    EU072744
    UniProtKB/TrEMBL
    A0A1S4CV59, A7LP32
    Conserved Domains (6) summary
    cd06186
    Location:640 → 904
    NOX_Duox_like_FAD_NADP; NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX ...
    COG0640
    Location:234 → 333
    ArsR; DNA-binding transcriptional regulator, ArsR family [Transcription]
    COG5126
    Location:185 → 341
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
    pfam01794
    Location:446 → 593
    Ferric_reduct; Ferric reductase like transmembrane component
    pfam08030
    Location:757 → 944
    NAD_binding_6; Ferric reductase NAD binding domain
    pfam08414
    Location:185 → 277
    NADPH_Ox; Respiratory burst NADPH oxidase

RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015832405.1 Reference Ntab-TN90 Primary Assembly

    Range
    24665..36582
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016649398.1 → XP_016504884.1  respiratory burst oxidase homolog protein A-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases