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LOC107817646 probable UDP-arabinopyranose mutase 5 [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107817646, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107817646
Gene description
probable UDP-arabinopyranose mutase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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See LOC107817646 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015816896.1 (23202..26336, complement)

NW_015816896.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015816896.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-arabinopyranose mutase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015816896.1 Reference Ntab-TN90 Primary Assembly

    Range
    23202..26336 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016643513.1 → XP_016498999.1  probable UDP-arabinopyranose mutase 5

    UniProtKB/TrEMBL
    A0A1S4CDG6
    Conserved Domains (1) summary
    pfam03214
    Location:6 → 344
    RGP; Reversibly glycosylated polypeptide

  2. XM_016643512.1 → XP_016498998.1  probable UDP-arabinopyranose mutase 5

    UniProtKB/TrEMBL
    A0A1S4CDG6
    Conserved Domains (1) summary
    pfam03214
    Location:6 → 344
    RGP; Reversibly glycosylated polypeptide
Nucleotide Protein
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