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LOC107814850 glucan endo-1,3-beta-glucosidase, acidic [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107814850, updated on 31-Jan-2024

Summary

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Gene symbol
LOC107814850
Gene description
glucan endo-1,3-beta-glucosidase, acidic
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Also known as
PR-35
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Genomic context

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See LOC107814850 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015789320.1 (32070..33878, complement)

NW_015789320.1Genomic Context describing neighboring genes Neighboring gene probable inactive purple acid phosphatase 16 Neighboring gene protein IQ-DOMAIN 14

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015789320.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for a third structural class of beta-1,3-glucanase in tobacco. Payne G, et al. Plant Mol Biol, 1990 Dec. PMID 2103473

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucan endo-1,3-beta-glucosidase, acidic; glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q'
Names
(1->3)-beta-glucan endohydrolase
(1->3)-beta-glucanase
Beta-1,3-endoglucanase
XP_016495818.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001425939.1 → NP_001412868.1  glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q' precursor

    Status: VALIDATED

    Source sequence(s)
    FS408334, X54456
    UniProtKB/Swiss-Prot
    P36401
    UniProtKB/TrEMBL
    A0A1S4C433

RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015789320.1 Reference Ntab-TN90 Primary Assembly

    Range
    32070..33878 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016640332.1 → XP_016495818.1  glucan endo-1,3-beta-glucosidase, acidic

    Conserved Domains (1) summary
    pfam00332
    Location:27 → 338
    Glyco_hydro_17; Glycosyl hydrolases family 17
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P36401.1 GenPept UniProtKB/Swiss-Prot:P36401

Gene LinkOut

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Molecular Biology Databases