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LOC107811884 copper-transporting ATPase PAA1, chloroplastic-like [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107811884, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107811884
Gene description
copper-transporting ATPase PAA1, chloroplastic-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC107811884 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015952966.1 (4..14302)

NW_015952966.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015952966.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type divalent copper transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in copper ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
copper-transporting ATPase PAA1, chloroplastic-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015952966.1 Reference Ntab-TN90 Primary Assembly

    Range
    4..14302
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016636878.1 → XP_016492364.1  copper-transporting ATPase PAA1, chloroplastic-like

    UniProtKB/TrEMBL
    A0A1S4BU06
Nucleotide Protein
Heading Accession and Version

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