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LOC107810853 laccase-4-like [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107810853, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107810853
Gene description
laccase-4-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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See LOC107810853 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015950946.1 (19578..23100)

NW_015950946.1Genomic Context describing neighboring genes Neighboring gene laccase-17-like Neighboring gene craniofacial development protein 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015950946.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lignin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laccase-4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015950946.1 Reference Ntab-TN90 Primary Assembly

    Range
    19578..23100
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016635682.1 → XP_016491168.1  laccase-4-like

    UniProtKB/TrEMBL
    A0A1S4BQU3
    Conserved Domains (4) summary
    cd13849
    Location:37 → 153
    CuRO_1_LCC_plant; The first cupredoxin domain of plant laccases
    cd13875
    Location:168 → 316
    CuRO_2_LCC_plant; The second cupredoxin domain of the plant laccases
    cd13897
    Location:425 → 562
    CuRO_3_LCC_plant; The third cupredoxin domain of the plant laccases
    TIGR03389
    Location:32 → 579
    laccase; laccase, plant
Nucleotide Protein
Heading Accession and Version

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