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LOC107807968 protein DETOXIFICATION 40-like [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107807968, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107807968
Gene description
protein DETOXIFICATION 40-like
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Also known as
NtMATE2
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015804227.1 (133910..138257, complement)

NW_015804227.1Genomic Context describing neighboring genes Neighboring gene isoflavone reductase homolog A622-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015804227.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Crystal structures of a nicotine MATE transporter provide insight into its mechanism of substrate transport. Tanaka Y, et al. FEBS Lett, 2021 Jul. PMID 34050946
  2. Multidrug and toxic compound extrusion-type transporters implicated in vacuolar sequestration of nicotine in tobacco roots. Shoji T, et al. Plant Physiol, 2009 Feb. PMID 19098091, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Crystal structures of a nicotine MATE transporter provide insight into its mechanism of substrate transport.
    Title: Crystal structures of a nicotine MATE transporter provide insight into its mechanism of substrate transport.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xenobiotic transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xenobiotic detoxification by transmembrane export across the plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein DETOXIFICATION 40-like
Names
multi antimicrobial extrusion family protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001325814.1 → NP_001312743.1  protein DETOXIFICATION 40-like

    Status: PROVISIONAL

    Source sequence(s)
    AB286962
    UniProtKB/TrEMBL
    A3KDM5
    Conserved Domains (2) summary
    cd13132
    Location:46 → 481
    MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family
    TIGR00797
    Location:56 → 397
    matE; putative efflux protein, MATE family

RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015804227.1 Reference Ntab-TN90 Primary Assembly

    Range
    133910..138257 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016632451.1 → XP_016487937.1  protein DETOXIFICATION 40-like

    Conserved Domains (2) summary
    cd13132
    Location:46 → 481
    MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family
    TIGR00797
    Location:56 → 397
    matE; putative efflux protein, MATE family
Nucleotide Protein
Heading Accession and Version

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