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LOC107807832 pathogenesis-related protein 1B [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107807832, updated on 10-Oct-2024

Summary

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Gene symbol
LOC107807832
Gene description
pathogenesis-related protein 1B
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Also known as
PR-1B
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Genomic context

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See LOC107807832 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015945158.1 (184056..184836)

NW_015945158.1Genomic Context describing neighboring genes Neighboring gene pathogenesis-related protein 1B-like Neighboring gene uncharacterized LOC107807834

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015945158.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular characterization of messenger RNAs for 'pathogenesis related' proteins la, lb and lc, induced by TMV infection of tobacco. Cornelissen BJ, et al. EMBO J, 1986 Jan. PMID 16453665, Free PMC Article
  2. Isolation and characterization of cDNA clones encoding pathogenesis-related proteins from tobacco mosaic virus infected tobacco plants. Pfitzner UM, et al. Nucleic Acids Res, 1987 Jun 11. PMID 3295779, Free PMC Article
  3. Isolation and nucleotide sequence of cDNA clones for the pathogenesis-related proteins PR1a, PR1b and PR1c of Nicotiana tabacum cv. Xanthi nc induced by TMV infection. Cutt JR, et al. Nucleic Acids Res, 1988 Oct 25. PMID 3186451, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pathogenesis-related protein 1B
Names
PR-1b precursor; (aa -30-138)
PR1b preprotein
PR1b protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001405276.1 → NP_001392205.1  pathogenesis-related protein 1B precursor

    Status: VALIDATED

    Source sequence(s)
    AYMY01020634, EG650286, FS409544
    UniProtKB/TrEMBL
    A0A1S4BFY9

RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015945158.1 Reference Ntab-TN90 Primary Assembly

    Range
    184056..184836
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016632270.1 → XP_016487756.1  pathogenesis-related protein 1B

    UniProtKB/TrEMBL
    A0A1S4BFY9
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P07053.1 GenPept UniProtKB/Swiss-Prot:P07053

Gene LinkOut

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Molecular Biology Databases