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LOC107805797 respiratory burst oxidase homolog protein E-like [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107805797, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107805797
Gene description
respiratory burst oxidase homolog protein E-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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See LOC107805797 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015941579.1 (9224..20723, complement)

NW_015941579.1Genomic Context describing neighboring genes Neighboring gene peroxiredoxin Q, chloroplastic-like Neighboring gene uncharacterized LOC107805799 Neighboring gene transfer RNA alanine (anticodon UGC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015941579.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD(P)H oxidase H2O2-forming activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peroxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
respiratory burst oxidase homolog protein E-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015941579.1 Reference Ntab-TN90 Primary Assembly

    Range
    9224..20723 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016629882.1 → XP_016485368.1  respiratory burst oxidase homolog protein E-like isoform X1

    UniProtKB/TrEMBL
    A0A1S4B991
    Conserved Domains (7) summary
    cd00051
    Location:250 → 297
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam01794
    Location:438 → 585
    Ferric_reduct; Ferric reductase like transmembrane component
    pfam08022
    Location:627 → 744
    FAD_binding_8; FAD-binding domain
    pfam08030
    Location:750 → 932
    NAD_binding_6; Ferric reductase NAD binding domain
    pfam08414
    Location:172 → 269
    NADPH_Ox; Respiratory burst NADPH oxidase
    pfam13499
    Location:276 → 340
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:276 → 333
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  2. XM_016629883.1 → XP_016485369.1  respiratory burst oxidase homolog protein E-like isoform X2

    UniProtKB/TrEMBL
    A0A1S4B915
    Conserved Domains (6) summary
    cd06186
    Location:632 → 902
    NOX_Duox_like_FAD_NADP; NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX ...
    cd00051
    Location:250 → 297
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam01794
    Location:438 → 585
    Ferric_reduct; Ferric reductase like transmembrane component
    pfam08414
    Location:172 → 269
    NADPH_Ox; Respiratory burst NADPH oxidase
    pfam13499
    Location:276 → 340
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:276 → 333
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
Nucleotide Protein
Heading Accession and Version

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