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LOC107805029 probable pectate lyase 5 [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107805029, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107805029
Gene description
probable pectate lyase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015940171.1 (54216..58457)

NW_015940171.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107805028

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015940171.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectate lyase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015940171.1 Reference Ntab-TN90 Primary Assembly

    Range
    54216..58457
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016629000.1 → XP_016484486.1  probable pectate lyase 5

    UniProtKB/TrEMBL
    A0A1S4B6I1
    Conserved Domains (1) summary
    smart00656
    Location:128 → 323
    Amb_all; Amb_all domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases