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LOC107789131 sucrose synthase [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107789131, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107789131
Gene description
sucrose synthase
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Also known as
SUSY
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Genomic context

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See LOC107789131 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015916701.1 (51022..56827, complement)

NW_015916701.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107789128 Neighboring gene sucrose synthase-like Neighboring gene uncharacterized LOC107789126 Neighboring gene kinesin-like protein NACK2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015916701.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sucrose synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015916701.1 Reference Ntab-TN90 Primary Assembly

    Range
    51022..56827 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016610901.1 → XP_016466387.1  sucrose synthase

    UniProtKB/TrEMBL
    A0A1S3ZPV3, W8R7K1
    Conserved Domains (3) summary
    PLN00142
    Location:1 → 805
    PLN00142; sucrose synthase
    pfam00534
    Location:565 → 746
    Glycos_transf_1; Glycosyl transferases group 1
    pfam00862
    Location:16 → 553
    Sucrose_synth; Sucrose synthase

  2. XM_016610904.1 → XP_016466390.1  sucrose synthase

    UniProtKB/TrEMBL
    A0A1S3ZPV3, W8R7K1
    Conserved Domains (3) summary
    PLN00142
    Location:1 → 805
    PLN00142; sucrose synthase
    pfam00534
    Location:565 → 746
    Glycos_transf_1; Glycosyl transferases group 1
    pfam00862
    Location:16 → 553
    Sucrose_synth; Sucrose synthase

  3. XM_016610903.1 → XP_016466389.1  sucrose synthase

    UniProtKB/TrEMBL
    A0A1S3ZPV3, W8R7K1
    Conserved Domains (3) summary
    PLN00142
    Location:1 → 805
    PLN00142; sucrose synthase
    pfam00534
    Location:565 → 746
    Glycos_transf_1; Glycosyl transferases group 1
    pfam00862
    Location:16 → 553
    Sucrose_synth; Sucrose synthase
Nucleotide Protein
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