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LOC107787940 probable monogalactosyldiacylglycerol synthase, chloroplastic [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107787940, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107787940
Gene description
probable monogalactosyldiacylglycerol synthase, chloroplastic
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Also known as
NtMGD1
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Genomic context

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See LOC107787940 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015915157.1 (28302..36165)

NW_015915157.1Genomic Context describing neighboring genes Neighboring gene ER membrane protein complex subunit 4-like Neighboring gene uncharacterized LOC107787941 Neighboring gene transfer RNA valine (anticodon AAC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015915157.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two types of MGDG synthase genes, found widely in both 16:3 and 18:3 plants, differentially mediate galactolipid syntheses in photosynthetic and nonphotosynthetic tissues in Arabidopsis thaliana. Awai K, et al. Proc Natl Acad Sci U S A, 2001 Sep 11. PMID 11553816, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable monogalactosyldiacylglycerol synthase, chloroplastic
Names
MGD A
MGDG synthase type A
ntMGD A
XP_016465046.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001325448.1 → NP_001312377.1  probable monogalactosyldiacylglycerol synthase, chloroplastic

    Status: PROVISIONAL

    Source sequence(s)
    AB047476
    UniProtKB/Swiss-Prot
    Q9FZL3
    UniProtKB/TrEMBL
    A0A1S3ZKY8
    Conserved Domains (3) summary
    PLN02605
    Location:147 → 526
    PLN02605; monogalactosyldiacylglycerol synthase
    pfam06925
    Location:158 → 326
    MGDG_synth; Monogalactosyldiacylglycerol (MGDG) synthase
    cl10013
    Location:290 → 516
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...

RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015915157.1 Reference Ntab-TN90 Primary Assembly

    Range
    28302..36165
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016609560.1 → XP_016465046.1  probable monogalactosyldiacylglycerol synthase, chloroplastic

    Conserved Domains (3) summary
    PLN02605
    Location:147 → 526
    PLN02605; monogalactosyldiacylglycerol synthase
    pfam06925
    Location:158 → 326
    MGDG_synth; Monogalactosyldiacylglycerol (MGDG) synthase
    cl10013
    Location:290 → 516
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FZL3.1 GenPept UniProtKB/Swiss-Prot:Q9FZL3

Gene LinkOut

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Molecular Biology Databases