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LOC107784797 ethylene receptor [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107784797, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107784797
Gene description
ethylene receptor
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Also known as
ETR1; NT-ETR1
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Genomic context

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See LOC107784797 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015911495.1 (37941..46459, complement)

NW_015911495.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015911495.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ethylene binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ethylene receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphorelay sensor kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphorelay signal transduction system IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to ethylene IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ethylene receptor
Names
ethylene receptor ETR1 homolog
XP_016461466.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001325388.1 → NP_001312317.1  ethylene receptor

    Status: PROVISIONAL

    Source sequence(s)
    EU620576
    UniProtKB/Swiss-Prot
    O48929
    UniProtKB/TrEMBL
    B2MUK2
    Conserved Domains (4) summary
    smart00065
    Location:157 → 313
    GAF; Domain present in phytochromes and cGMP-specific phosphodiesterases
    smart00387
    Location:453 → 583
    HATPase_c; Histidine kinase-like ATPases
    smart00388
    Location:341 → 406
    HisKA; His Kinase A (phosphoacceptor) domain
    cd00156
    Location:615 → 730
    REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...

RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015911495.1 Reference Ntab-TN90 Primary Assembly

    Range
    37941..46459 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016605980.1 → XP_016461466.1  ethylene receptor

    UniProtKB/Swiss-Prot
    O48929
    UniProtKB/TrEMBL
    A0A1S3ZAM5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O48929.1 GenPept UniProtKB/Swiss-Prot:O48929

Gene LinkOut

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Molecular Biology Databases