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LOC107780738 soluble starch synthase 1, chloroplastic/amyloplastic [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107780738, updated on 18-Sep-2024

Summary

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Gene symbol
LOC107780738
Gene description
soluble starch synthase 1, chloroplastic/amyloplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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See LOC107780738 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015906652.1 (3886..15263)

NW_015906652.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107780741 Neighboring gene phytolongin Phyl2.2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015906652.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
soluble starch synthase 1, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015906652.1 Reference Ntab-TN90 Primary Assembly

    Range
    3886..15263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016601318.1 → XP_016456804.1  soluble starch synthase 1, chloroplastic/amyloplastic isoform X2

    UniProtKB/TrEMBL
    A0A1S3YXJ3
    Conserved Domains (1) summary
    cd03791
    Location:129 → 629
    GT5_Glycogen_synthase_DULL1-like; Glycogen synthase GlgA and similar proteins

  2. XM_016601319.1 → XP_016456805.1  soluble starch synthase 1, chloroplastic/amyloplastic isoform X2

    UniProtKB/TrEMBL
    A0A1S3YXJ3
    Conserved Domains (1) summary
    cd03791
    Location:129 → 629
    GT5_Glycogen_synthase_DULL1-like; Glycogen synthase GlgA and similar proteins

  3. XM_016601320.1 → XP_016456806.1  soluble starch synthase 1, chloroplastic/amyloplastic isoform X3

    UniProtKB/TrEMBL
    A0A1S3YWV1
    Conserved Domains (2) summary
    cd03791
    Location:141 → 607
    GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
    TIGR02095
    Location:140 → 606
    glgA; glycogen/starch synthase, ADP-glucose type

  4. XM_016601317.1 → XP_016456803.1  soluble starch synthase 1, chloroplastic/amyloplastic isoform X1

    UniProtKB/TrEMBL
    A0A1S3YXE8
    Conserved Domains (2) summary
    cd03791
    Location:141 → 641
    GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
    TIGR02095
    Location:140 → 640
    glgA; glycogen/starch synthase, ADP-glucose type
Nucleotide Protein
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