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LOC107779725 phospholipase D alpha 1 [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107779725, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107779725
Gene description
phospholipase D alpha 1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Also known as
PLD1
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Genomic context

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See LOC107779725 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015905454.1 (58193..64369)

NW_015905454.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107779729 Neighboring gene uncharacterized LOC107779730 Neighboring gene uncharacterized LOC107779728

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015905454.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipase D activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylcholine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phospholipase D alpha 1
Names
Choline phosphatase 1
PLD alpha 1
Phosphatidylcholine-hydrolyzing phospholipase D 1
XP_016455689.1
XP_016455690.1
XP_016455691.1
XP_016455692.1
XP_016455693.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001325288.1 → NP_001312217.1  phospholipase D alpha 1

    Status: PROVISIONAL

    Source sequence(s)
    Z84822
    UniProtKB/Swiss-Prot
    P93399, P93400
    Conserved Domains (4) summary
    PLN02270
    Location:1 → 808
    PLN02270; phospholipase D alpha
    cd04015
    Location:2 → 148
    C2_plant_PLD; C2 domain present in plant phospholipase D (PLD)
    pfam12357
    Location:729 → 798
    PLD_C; Phospholipase D C terminal
    cl15239
    Location:493 → 701
    PLDc_SF; Catalytic domain of phospholipase D superfamily proteins

RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015905454.1 Reference Ntab-TN90 Primary Assembly

    Range
    58193..64369
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016600206.1 → XP_016455692.1  phospholipase D alpha 1

    UniProtKB/TrEMBL
    A0A1S3YU94
    Conserved Domains (5) summary
    PLN02270
    Location:1 → 808
    PLN02270; phospholipase D alpha
    cd04015
    Location:2 → 148
    C2_plant_PLD; C2 domain present in plant phospholipase D (PLD)
    cd09199
    Location:492 → 701
    PLDc_pPLDalpha_2; Catalytic domain, repeat 2, of plant alpha-type phospholipase D
    pfam12357
    Location:729 → 798
    PLD_C; Phospholipase D C terminal
    cl15239
    Location:201 → 378
    PLDc_SF; Catalytic domain of phospholipase D superfamily proteins

  2. XM_016600207.1 → XP_016455693.1  phospholipase D alpha 1

    UniProtKB/TrEMBL
    A0A1S3YU94
    Conserved Domains (5) summary
    PLN02270
    Location:1 → 808
    PLN02270; phospholipase D alpha
    cd04015
    Location:2 → 148
    C2_plant_PLD; C2 domain present in plant phospholipase D (PLD)
    cd09199
    Location:492 → 701
    PLDc_pPLDalpha_2; Catalytic domain, repeat 2, of plant alpha-type phospholipase D
    pfam12357
    Location:729 → 798
    PLD_C; Phospholipase D C terminal
    cl15239
    Location:201 → 378
    PLDc_SF; Catalytic domain of phospholipase D superfamily proteins

  3. XM_016600205.1 → XP_016455691.1  phospholipase D alpha 1

    UniProtKB/TrEMBL
    A0A1S3YU94
    Conserved Domains (5) summary
    PLN02270
    Location:1 → 808
    PLN02270; phospholipase D alpha
    cd04015
    Location:2 → 148
    C2_plant_PLD; C2 domain present in plant phospholipase D (PLD)
    cd09199
    Location:492 → 701
    PLDc_pPLDalpha_2; Catalytic domain, repeat 2, of plant alpha-type phospholipase D
    pfam12357
    Location:729 → 798
    PLD_C; Phospholipase D C terminal
    cl15239
    Location:201 → 378
    PLDc_SF; Catalytic domain of phospholipase D superfamily proteins

  4. XM_016600203.1 → XP_016455689.1  phospholipase D alpha 1

    UniProtKB/TrEMBL
    A0A1S3YU94
    Conserved Domains (5) summary
    PLN02270
    Location:1 → 808
    PLN02270; phospholipase D alpha
    cd04015
    Location:2 → 148
    C2_plant_PLD; C2 domain present in plant phospholipase D (PLD)
    cd09199
    Location:492 → 701
    PLDc_pPLDalpha_2; Catalytic domain, repeat 2, of plant alpha-type phospholipase D
    pfam12357
    Location:729 → 798
    PLD_C; Phospholipase D C terminal
    cl15239
    Location:201 → 378
    PLDc_SF; Catalytic domain of phospholipase D superfamily proteins

  5. XM_016600204.1 → XP_016455690.1  phospholipase D alpha 1

    Conserved Domains (5) summary
    PLN02270
    Location:1 → 808
    PLN02270; phospholipase D alpha
    cd04015
    Location:2 → 148
    C2_plant_PLD; C2 domain present in plant phospholipase D (PLD)
    cd09199
    Location:492 → 701
    PLDc_pPLDalpha_2; Catalytic domain, repeat 2, of plant alpha-type phospholipase D
    pfam12357
    Location:729 → 798
    PLD_C; Phospholipase D C terminal
    cl15239
    Location:201 → 378
    PLDc_SF; Catalytic domain of phospholipase D superfamily proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P93400.2 GenPept UniProtKB/Swiss-Prot:P93400

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