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LOC107779445 probable beta-1,3-galactosyltransferase 2 [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107779445, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107779445
Gene description
probable beta-1,3-galactosyltransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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See LOC107779445 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015905175.1 (43302..47372)

NW_015905175.1Genomic Context describing neighboring genes Neighboring gene heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015905175.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,3-galactosyltransferase 2; probable beta-1,3-galactosyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015905175.1 Reference Ntab-TN90 Primary Assembly

    Range
    43302..47372
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016599881.1 → XP_016455367.1  probable beta-1,3-galactosyltransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A1S3YTM0
    Conserved Domains (3) summary
    PLN03193
    Location:6 → 409
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam13334
    Location:21 → 114
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:154 → 352
    Galactosyl_T; Galactosyltransferase

  2. XM_016599882.1 → XP_016455368.1  probable beta-1,3-galactosyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A1S3YT89

  3. XM_016599883.1 → XP_016455369.1  probable beta-1,3-galactosyltransferase 2 isoform X3

    UniProtKB/TrEMBL
    A0A1S3YT35
Nucleotide Protein
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