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LOC107770932 squamosa promoter-binding-like protein 6 [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107770932, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107770932
Gene description
squamosa promoter-binding-like protein 6
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Also known as
NtabSPL6-5
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Genomic context

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See LOC107770932 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015891042.1 (3527..10030, complement)

NW_015891042.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015891042.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization and phylogenetic analysis of fifteen NtabSPL genes in Nicotiana tabacum L. cv. Qinyan95. Han YY, et al. Dev Genes Evol, 2016 Jan. PMID 26635304
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squamosa promoter-binding-like protein 6
Names
squamosa promoter binding protein NtabSPL6-5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001325085.1 → NP_001312014.1  squamosa promoter-binding-like protein 6

    Status: PROVISIONAL

    Source sequence(s)
    LC073293
    UniProtKB/TrEMBL
    A0A125SZN2, A0A240EUQ8
    Conserved Domains (1) summary
    pfam03110
    Location:163 → 237
    SBP; SBP domain

RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015891042.1 Reference Ntab-TN90 Primary Assembly

    Range
    3527..10030 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016590259.1 → XP_016445745.1  squamosa promoter-binding-like protein 6

    UniProtKB/TrEMBL
    A0A125SZN2, A0A240EUQ8
    Conserved Domains (1) summary
    pfam03110
    Location:163 → 237
    SBP; SBP domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases