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LOC107769908 probable WRKY transcription factor 26 [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107769908, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107769908
Gene description
probable WRKY transcription factor 26
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Also known as
NtWRKY-6
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Genomic context

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See LOC107769908 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015889972.1 (23169..26251, complement)

NW_015889972.1Genomic Context describing neighboring genes Neighboring gene CASP-like protein 4B1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015889972.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Role of conserved residues of the WRKY domain in the DNA-binding of tobacco WRKY family proteins. Maeo K, et al. Biosci Biotechnol Biochem, 2001 Nov. PMID 11791715
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable WRKY transcription factor 26
Names
WRKY DNA-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001325041.1 → NP_001311970.1  probable WRKY transcription factor 26

    Status: PROVISIONAL

    Source sequence(s)
    AB063573
    UniProtKB/TrEMBL
    Q94IB6, Q9XJ26
    Conserved Domains (1) summary
    smart00774
    Location:389 → 446
    WRKY; DNA binding domain

RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015889972.1 Reference Ntab-TN90 Primary Assembly

    Range
    23169..26251 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016589165.1 → XP_016444651.1  probable WRKY transcription factor 26 isoform X1

    UniProtKB/TrEMBL
    A0A1S3XXH8, Q9XJ26
    Conserved Domains (1) summary
    smart00774
    Location:390 → 447
    WRKY; DNA binding domain

  2. XM_016589167.1 → XP_016444653.1  probable WRKY transcription factor 26 isoform X2

    Conserved Domains (1) summary
    smart00774
    Location:389 → 446
    WRKY; DNA binding domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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