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dysf dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive) [ Sinocyclocheilus rhinocerous ]

Gene ID: 107750586, updated on 14-Mar-2024

Summary

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Gene symbol
dysf
Gene description
dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)
See related
Ensembl:ENSSRHG00000004743
Gene type
protein coding
RefSeq status
MODEL
Organism
Sinocyclocheilus rhinocerous
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus
Orthologs
human zebrafish all
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Genomic context

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See dysf in Genome Data Viewer
Location:
chromosome: Un
Exon count:
58
Annotation release Status Assembly Chr Location
100 current SAMN03320098_v1.1 (GCF_001515625.1) Unplaced Scaffold NW_015638975.1 (3771131..3845826)

NW_015638975.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase TRIM39-like Neighboring gene E3 ubiquitin-protein ligase TRIM39-like Neighboring gene cytochrome P450 26B1 Neighboring gene exocyst complex component 6B-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015638975.1 Unplaced Scaffold Reference SAMN03320098_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T-tubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macrophage activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monocyte activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma membrane repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in T-tubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dysferlin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sinocyclocheilus rhinocerous Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SAMN03320098_v1.1 Primary Assembly

Genomic

  1. NW_015638975.1 Reference SAMN03320098_v1.1 Primary Assembly

    Range
    3771131..3845826
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016566062.1 → XP_016421548.1  dysferlin-like isoform X2

    UniProtKB/TrEMBL
    A0A673HJU8
    Related
    ENSSRHP00000025999.1, ENSSRHT00000026776.1

  2. XM_016566061.1 → XP_016421547.1  dysferlin-like isoform X1

    UniProtKB/TrEMBL
    A0A673HJU8

  3. XM_016566066.1 → XP_016421552.1  dysferlin-like isoform X5

    UniProtKB/TrEMBL
    A0A673HJU8

  4. XM_016566065.1 → XP_016421551.1  dysferlin-like isoform X4

    UniProtKB/TrEMBL
    A0A673HJU8
    Related
    ENSSRHP00000026983.1, ENSSRHT00000027779.1

  5. XM_016566064.1 → XP_016421550.1  dysferlin-like isoform X3

    UniProtKB/TrEMBL
    A0A673HJU8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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