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atp6v0d1 ATPase H+ transporting V0 subunit d1 [ Sinocyclocheilus rhinocerous ]

Gene ID: 107740464, updated on 12-Sep-2024

Summary

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Gene symbol
atp6v0d1
Gene description
ATPase H+ transporting V0 subunit d1
See related
Ensembl:ENSSRHG00000043385
Gene type
protein coding
RefSeq status
MODEL
Organism
Sinocyclocheilus rhinocerous
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus
Orthologs
human zebrafish all
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Genomic context

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See atp6v0d1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current SAMN03320098_v1.1 (GCF_001515625.1) Unplaced Scaffold NW_015630532.1 (2210340..2214486)

NW_015630532.1Genomic Context describing neighboring genes Neighboring gene zinc finger SWIM domain-containing protein 7-like Neighboring gene agouti related neuropeptide Neighboring gene hydroxysteroid (11-beta) dehydrogenase 2 Neighboring gene zinc finger DHHC-type containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015630532.1 Unplaced Scaffold Reference SAMN03320098_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuolar acidification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuolar transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of plasma membrane proton-transporting V-type ATPase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proton-transporting V-type ATPase, V0 domain IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of vacuolar proton-transporting V-type ATPase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V-type proton ATPase subunit d 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sinocyclocheilus rhinocerous Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SAMN03320098_v1.1 Primary Assembly

Genomic

  1. NW_015630532.1 Reference SAMN03320098_v1.1 Primary Assembly

    Range
    2210340..2214486
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016552913.1 → XP_016408399.1  V-type proton ATPase subunit d 1

    UniProtKB/TrEMBL
    A0A673M808, A0A673MHT8
    Related
    ENSSRHP00000087737.1, ENSSRHT00000090109.1

  2. XM_016552912.1 → XP_016408398.1  V-type proton ATPase subunit d 1

    UniProtKB/TrEMBL
    A0A673M808, A0A673MHT8
    Related
    ENSSRHP00000087738.1, ENSSRHT00000090110.1
Nucleotide Protein
Heading Accession and Version

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