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sgca sarcoglycan, alpha [ Sinocyclocheilus anshuiensis ]

Gene ID: 107693629, updated on 14-Mar-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
See related
Ensembl:ENSSANG00000012800
Gene type
protein coding
RefSeq status
MODEL
Organism
Sinocyclocheilus anshuiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current SAMN03320099.WGS_v1.1 (GCF_001515605.1) Unplaced Scaffold NW_015542451.1 (1618235..1626474)

NW_015542451.1Genomic Context describing neighboring genes Neighboring gene dicarbonyl/L-xylulose reductase Neighboring gene RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase Neighboring gene collagen, type I, alpha 1b Neighboring gene putative all-trans-retinol 13,14-reductase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015542451.1 Unplaced Scaffold Reference SAMN03320099.WGS_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sinocyclocheilus anshuiensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SAMN03320099.WGS_v1.1 Primary Assembly

Genomic

  1. NW_015542451.1 Reference SAMN03320099.WGS_v1.1 Primary Assembly

    Range
    1618235..1626474
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016493077.1 → XP_016348563.1  alpha-sarcoglycan-like

    UniProtKB/TrEMBL
    A0A671LZS6
    Related
    ENSSANP00000024864.1, ENSSANT00000026481.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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