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LOC107656308 transmembrane and TPR repeat-containing protein 1-like [ Sinocyclocheilus anshuiensis ]

Gene ID: 107656308, updated on 9-Nov-2023

Summary

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Gene symbol
LOC107656308
Gene description
transmembrane and TPR repeat-containing protein 1-like
See related
Ensembl:ENSSANG00000049850
Gene type
protein coding
RefSeq status
MODEL
Organism
Sinocyclocheilus anshuiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus
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Genomic context

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See LOC107656308 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current SAMN03320099.WGS_v1.1 (GCF_001515605.1) Unplaced Scaffold NW_015548309.1 (1099897..1145661, complement)

NW_015548309.1Genomic Context describing neighboring genes Neighboring gene lipase maturation factor 2-like Neighboring gene polyserase-2-like Neighboring gene importin 8 Neighboring gene UPF0536 protein C12orf66 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015548309.1 Unplaced Scaffold Reference SAMN03320099.WGS_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sinocyclocheilus anshuiensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SAMN03320099.WGS_v1.1 Primary Assembly

Genomic

  1. NW_015548309.1 Reference SAMN03320099.WGS_v1.1 Primary Assembly

    Range
    1099897..1145661 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016444079.1 → XP_016299565.1  transmembrane and TPR repeat-containing protein 1-like

    UniProtKB/TrEMBL
    A0A671SZ17
    Related
    ENSSANP00000101520.1, ENSSANT00000107755.1
Nucleotide Protein
Heading Accession and Version

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