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LOC107654585 xylosyltransferase 2-like [ Sinocyclocheilus anshuiensis ]

Gene ID: 107654585, updated on 9-Nov-2023

Summary

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Gene symbol
LOC107654585
Gene description
xylosyltransferase 2-like
See related
Ensembl:ENSSANG00000031239
Gene type
protein coding
RefSeq status
MODEL
Organism
Sinocyclocheilus anshuiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus
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Genomic context

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See LOC107654585 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current SAMN03320099.WGS_v1.1 (GCF_001515605.1) Unplaced Scaffold NW_015548230.1 (293280..326355)

NW_015548230.1Genomic Context describing neighboring genes Neighboring gene butyrophilin subfamily 3 member A3-like Neighboring gene uncharacterized LOC107654587 Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene ras-related protein Rab-37-like Neighboring gene Na(+)/H(+) exchange regulatory cofactor NHE-RF1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015548230.1 Unplaced Scaffold Reference SAMN03320099.WGS_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sinocyclocheilus anshuiensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SAMN03320099.WGS_v1.1 Primary Assembly

Genomic

  1. NW_015548230.1 Reference SAMN03320099.WGS_v1.1 Primary Assembly

    Range
    293280..326355
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016441728.1 → XP_016297214.1  xylosyltransferase 2-like isoform X1

    UniProtKB/TrEMBL
    A0A671PUF6, A0A671Q2Y8
    Related
    ENSSANP00000062810.1, ENSSANT00000066773.1

  2. XM_016441729.1 → XP_016297215.1  xylosyltransferase 2-like isoform X2

    UniProtKB/TrEMBL
    A0A671Q2Y8

  3. XM_016441730.1 → XP_016297216.1  xylosyltransferase 2-like isoform X3

    UniProtKB/TrEMBL
    A0A671Q2Y8
    Related
    ENSSANP00000062834.1, ENSSANT00000066797.1
Nucleotide Protein
Heading Accession and Version

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