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LOC107654173 carbohydrate sulfotransferase 1 [ Sinocyclocheilus anshuiensis ]

Gene ID: 107654173, updated on 9-Nov-2023

Summary

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Gene symbol
LOC107654173
Gene description
carbohydrate sulfotransferase 1
See related
Ensembl:ENSSANG00000049860
Gene type
protein coding
RefSeq status
MODEL
Organism
Sinocyclocheilus anshuiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus
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Genomic context

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See LOC107654173 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current SAMN03320099.WGS_v1.1 (GCF_001515605.1) Unplaced Scaffold NW_015548219.1 (2421577..2424734)

NW_015548219.1Genomic Context describing neighboring genes Neighboring gene cryptochrome circadian regulator 2 Neighboring gene carbohydrate sulfotransferase 1-like Neighboring gene Transmembrane protein 263-B-like Neighboring gene guanylate cyclase activator 1g

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015548219.1 Unplaced Scaffold Reference SAMN03320099.WGS_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables keratan sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sinocyclocheilus anshuiensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SAMN03320099.WGS_v1.1 Primary Assembly

Genomic

  1. NW_015548219.1 Reference SAMN03320099.WGS_v1.1 Primary Assembly

    Range
    2421577..2424734
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016441142.1 → XP_016296628.1  carbohydrate sulfotransferase 1

    UniProtKB/TrEMBL
    A0A671SY95

  2. XM_016441143.1 → XP_016296629.1  carbohydrate sulfotransferase 1

    UniProtKB/TrEMBL
    A0A671SY95
    Related
    ENSSANP00000101529.1, ENSSANT00000107765.1
Nucleotide Protein
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