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LOC107645741 probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [ Arachis ipaensis ]

Gene ID: 107645741, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107645741
Gene description
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107645741 in Genome Data Viewer
Location:
chromosome: B06
Exon count:
29
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B06 NC_029790.2 (16954567..16963008)
100 previous assembly Araip1.0 (GCF_000816755.1) B06 NC_029790.1 (10537260..10545631, complement)

Chromosome B06 - NC_029790.2Genomic Context describing neighboring genes Neighboring gene protein PIR Neighboring gene uncharacterized LOC107646412 Neighboring gene germin-like protein subfamily 1 member 7 Neighboring gene germin-like protein subfamily 1 member 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029790.2 Reference Araip1.1

    Range
    16954567..16963008
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016349828.2 → XP_016205314.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC isoform X3

  2. XM_016349827.2 → XP_016205313.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC isoform X1

    Conserved Domains (3) summary
    TIGR02917
    Location:71 → 492
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:296 → 324
    TPR; TPR repeat [structural motif]
    cl10013
    Location:513 → 949
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology

  3. XM_021104147.1 → XP_020959806.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC isoform X2

    Conserved Domains (3) summary
    sd00006
    Location:126 → 154
    TPR; TPR repeat [structural motif]
    cl10013
    Location:427 → 786
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
    cl26002
    Location:1 → 322
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

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