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LOC107645662 sucrose synthase 2 [ Arachis ipaensis ]

Gene ID: 107645662, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107645662
Gene description
sucrose synthase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107645662 in Genome Data Viewer
Location:
chromosome: B06
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B06 NC_029790.2 (8360296..8365874, complement)
100 previous assembly Araip1.0 (GCF_000816755.1) B06 NC_029790.1 (8350396..8355956, complement)

Chromosome B06 - NC_029790.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107647959 Neighboring gene endoglucanase 17 Neighboring gene putative GTP diphosphokinase RSH1, chloroplastic Neighboring gene uncharacterized LOC107645664

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sucrose synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029790.2 Reference Araip1.1

    Range
    8360296..8365874 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016349734.2 → XP_016205220.1  sucrose synthase 2

    Conserved Domains (1) summary
    PLN00142
    Location:1 → 810
    PLN00142; sucrose synthase
Nucleotide Protein
Heading Accession and Version

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