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LOC107645242 probable galacturonosyltransferase 6 [ Arachis ipaensis ]

Gene ID: 107645242, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107645242
Gene description
probable galacturonosyltransferase 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107645242 in Genome Data Viewer
Location:
chromosome: B06
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B06 NC_029790.2 (1415934..1422161)
100 previous assembly Araip1.0 (GCF_000816755.1) B06 NC_029790.1 (1043329..1049389, complement)

Chromosome B06 - NC_029790.2Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin protein ligase DRIP2 Neighboring gene magnesium transporter MRS2-I Neighboring gene uncharacterized LOC110263435 Neighboring gene photosystem II reaction center W protein, chloroplastic Neighboring gene glutathione reductase, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029790.2 Reference Araip1.1

    Range
    1415934..1422161
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016349225.2 → XP_016204711.1  probable galacturonosyltransferase 6 isoform X2

    Conserved Domains (1) summary
    cl28622
    Location:7 → 631
    PLN02870; Probable galacturonosyltransferase

  2. XM_016349224.2 → XP_016204710.1  probable galacturonosyltransferase 6 isoform X1

    Conserved Domains (1) summary
    PLN02718
    Location:7 → 633
    PLN02718; Probable galacturonosyltransferase
Nucleotide Protein
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