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LOC107645049 UDP-glycosyltransferase 88F4 [ Arachis ipaensis ]

Gene ID: 107645049, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107645049
Gene description
UDP-glycosyltransferase 88F4
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC107645049 in Genome Data Viewer
Location:
chromosome: B05
Exon count:
1
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B05 NC_029789.2 (149573801..149575360, complement)
100 previous assembly Araip1.0 (GCF_000816755.1) B05 NC_029789.1 (149108501..149110037, complement)

Chromosome B05 - NC_029789.2Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase BRI1-like 1 Neighboring gene probable WRKY transcription factor 2 Neighboring gene chloride channel protein CLC-f Neighboring gene uncharacterized protein At4g26450

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glycosyltransferase 88F4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029789.2 Reference Araip1.1

    Range
    149573801..149575360 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016349058.2 → XP_016204544.1  UDP-glycosyltransferase 88F4

    Conserved Domains (1) summary
    cl10013
    Location:5 → 473
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
Nucleotide Protein
Heading Accession and Version

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