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LOC107643711 alpha-1,4-glucan-protein synthase [UDP-forming] [ Arachis ipaensis ]

Gene ID: 107643711, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107643711
Gene description
alpha-1,4-glucan-protein synthase [UDP-forming]
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107643711 in Genome Data Viewer
Location:
chromosome: B05
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B05 NC_029789.2 (82695369..82697892)
100 previous assembly Araip1.0 (GCF_000816755.1) B05 NC_029789.1 (82378586..82381092)

Chromosome B05 - NC_029789.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107640742 Neighboring gene uncharacterized LOC107640743 Neighboring gene uncharacterized LOC107641920 Neighboring gene uncharacterized LOC110262893

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,4-glucan-protein synthase [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029789.2 Reference Araip1.1

    Range
    82695369..82697892
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016347429.2 → XP_016202915.1  alpha-1,4-glucan-protein synthase [UDP-forming]

    Conserved Domains (1) summary
    PLN03180
    Location:8 → 353
    PLN03180; reversibly glycosylated polypeptide; Provisional
Nucleotide Protein
Heading Accession and Version

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