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LOC107643186 probable fucosyltransferase 8 [ Arachis ipaensis ]

Gene ID: 107643186, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107643186
Gene description
probable fucosyltransferase 8
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107643186 in Genome Data Viewer
Location:
chromosome: B05
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B05 NC_029789.2 (18019757..18025375)
100 previous assembly Araip1.0 (GCF_000816755.1) B05 NC_029789.1 (17999956..18005733)

Chromosome B05 - NC_029789.2Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF3-1, mitochondrial-like Neighboring gene protein LOW PSII ACCUMULATION 3, chloroplastic-like Neighboring gene putative cyclic nucleotide-gated ion channel 7 Neighboring gene phosphoglucan phosphatase DSP4, chloroplastic-like Neighboring gene uncharacterized LOC110271809 Neighboring gene uncharacterized LOC110271810

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactoside 2-alpha-L-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable fucosyltransferase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029789.2 Reference Araip1.1

    Range
    18019757..18025375
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021123248.1 → XP_020978907.1  probable fucosyltransferase 8 isoform X1

    Conserved Domains (1) summary
    cl16914
    Location:135 → 591
    O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins

  2. XM_016346770.2 → XP_016202256.1  probable fucosyltransferase 8 isoform X2

Nucleotide Protein
Heading Accession and Version

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