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LOC107638628 soluble starch synthase 3, chloroplastic/amyloplastic [ Arachis ipaensis ]

Gene ID: 107638628, updated on 18-Sep-2024

Summary

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Gene symbol
LOC107638628
Gene description
soluble starch synthase 3, chloroplastic/amyloplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC107638628 in Genome Data Viewer
Location:
chromosome: B04
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B04 NC_029788.2 (5853361..5860163)
100 previous assembly Araip1.0 (GCF_000816755.1) B04 NC_029788.1 (5843461..5850196)

Chromosome B04 - NC_029788.2Genomic Context describing neighboring genes Neighboring gene lysine-rich arabinogalactan protein 19-like Neighboring gene ATP synthase gamma chain, chloroplastic Neighboring gene uncharacterized LOC107635908 Neighboring gene uncharacterized LOC110270868

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
soluble starch synthase 3, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029788.2 Reference Araip1.1

    Range
    5853361..5860163
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016341980.2 → XP_016197466.1  soluble starch synthase 3, chloroplastic/amyloplastic

    Conserved Domains (1) summary
    PLN02316
    Location:58 → 1081
    PLN02316; synthase/transferase
Nucleotide Protein
Heading Accession and Version

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