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LOC107635114 probable UDP-arabinopyranose mutase 5 [ Arachis ipaensis ]

Gene ID: 107635114, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107635114
Gene description
probable UDP-arabinopyranose mutase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107635114 in Genome Data Viewer
Location:
chromosome: B04
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B04 NC_029788.2 (122815382..122818414, complement)
100 previous assembly Araip1.0 (GCF_000816755.1) B04 NC_029788.1 (122429279..122432290, complement)

Chromosome B04 - NC_029788.2Genomic Context describing neighboring genes Neighboring gene protein LUTEIN DEFICIENT 5, chloroplastic Neighboring gene uncharacterized LOC107637158 Neighboring gene arogenate dehydrogenase 1, chloroplastic-like Neighboring gene arogenate dehydrogenase 2, chloroplastic-like Neighboring gene ALBINO3-like protein 2, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-arabinopyranose mutase 5; uncharacterized protein LOC107635114

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029788.2 Reference Araip1.1

    Range
    122815382..122818414 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016338493.2 → XP_016193979.1  probable UDP-arabinopyranose mutase 5 isoform X3

    Conserved Domains (1) summary
    pfam03214
    Location:84 → 421
    RGP; Reversibly glycosylated polypeptide

  2. XM_016338491.2 → XP_016193977.1  probable UDP-arabinopyranose mutase 5 isoform X1

    Conserved Domains (1) summary
    pfam03214
    Location:6 → 343
    RGP; Reversibly glycosylated polypeptide

  3. XM_016338492.2 → XP_016193978.1  uncharacterized protein LOC107635114 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases