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LOC107634048 cellulose synthase A catalytic subunit 8 [UDP-forming] [ Arachis ipaensis ]

Gene ID: 107634048, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107634048
Gene description
cellulose synthase A catalytic subunit 8 [UDP-forming]
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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Location:
chromosome: B03
Exon count:
25
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B03 NC_029787.2 (135416505..135428367, complement)
100 previous assembly Araip1.0 (GCF_000816755.1) B03 NC_029787.1 (135228154..135239985)

Chromosome B03 - NC_029787.2Genomic Context describing neighboring genes Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene receptor-like protein 51 Neighboring gene uncharacterized LOC110270487 Neighboring gene WAT1-related protein At3g30340-like Neighboring gene uncharacterized mitochondrial protein AtMg00810-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 8 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029787.2 Reference Araip1.1

    Range
    135416505..135428367 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021117500.1 → XP_020973159.1  cellulose synthase A catalytic subunit 8 [UDP-forming]

    Conserved Domains (3) summary
    sd00039
    Location:32 → 68
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:22 → 337
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl28038
    Location:406 → 1390
    Cellulose_synt; Cellulose synthase
Nucleotide Protein
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