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LOC107632149 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like [ Arachis ipaensis ]

Gene ID: 107632149, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107632149
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC107632149 in Genome Data Viewer
Location:
chromosome: B03
Exon count:
18
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B03 NC_029787.2 (135759616..135767704)
100 previous assembly Araip1.0 (GCF_000816755.1) B03 NC_029787.1 (134888870..134896098, complement)

Chromosome B03 - NC_029787.2Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At1g29660-like Neighboring gene GDSL esterase/lipase At5g45670 Neighboring gene exonuclease 1 Neighboring gene HBS1-like protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029787.2 Reference Araip1.1

    Range
    135759616..135767704
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016335817.2 → XP_016191303.2  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like

    Conserved Domains (1) summary
    PLN03064
    Location:5 → 929
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Nucleotide Protein
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