U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC107631459 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [ Arachis ipaensis ]

Gene ID: 107631459, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC107631459
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC107631459 in Genome Data Viewer
Location:
chromosome: B03
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B03 NC_029787.2 (125447635..125452359)
100 previous assembly Araip1.0 (GCF_000816755.1) B03 NC_029787.1 (125287962..125292635, complement)

Chromosome B03 - NC_029787.2Genomic Context describing neighboring genes Neighboring gene guanylate kinase 3, chloroplastic-like Neighboring gene guanylate kinase 3, chloroplastic-like Neighboring gene uncharacterized LOC107631458 Neighboring gene uncharacterized LOC107634713

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029787.2 Reference Araip1.1

    Range
    125447635..125452359
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021119658.1 → XP_020975317.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    Conserved Domains (1) summary
    PLN02205
    Location:1 → 845
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  2. XM_016334915.2 → XP_016190401.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    Conserved Domains (1) summary
    PLN02205
    Location:1 → 845
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  3. XM_016334914.2 → XP_016190400.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    Conserved Domains (1) summary
    PLN02205
    Location:1 → 845
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  4. XM_021119657.1 → XP_020975316.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    Conserved Domains (1) summary
    PLN02205
    Location:1 → 845
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  5. XM_021119659.1 → XP_020975318.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    Conserved Domains (1) summary
    PLN02205
    Location:1 → 845
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases