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LOC107623227 probable galacturonosyltransferase 11 [ Arachis ipaensis ]

Gene ID: 107623227, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107623227
Gene description
probable galacturonosyltransferase 11
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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Location:
chromosome: B10
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B10 NC_029794.2 (121367763..121371938, complement)
100 previous assembly Araip1.0 (GCF_000816755.1) B10 NC_029794.1 (120950062..120954265)

Chromosome B10 - NC_029794.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110268478 Neighboring gene isoaspartyl peptidase/L-asparaginase Neighboring gene uncharacterized LOC107623257 Neighboring gene fasciclin-like arabinogalactan protein 1 Neighboring gene uncharacterized LOC107623256

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029794.2 Reference Araip1.1

    Range
    121367763..121371938 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016325413.2 → XP_016180899.1  probable galacturonosyltransferase 11

    Conserved Domains (1) summary
    PLN02742
    Location:17 → 531
    PLN02742; Probable galacturonosyltransferase
Nucleotide Protein
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