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LOC107622579 digalactosyldiacylglycerol synthase 1, chloroplastic [ Arachis ipaensis ]

Gene ID: 107622579, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107622579
Gene description
digalactosyldiacylglycerol synthase 1, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis ipaensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC107622579 in Genome Data Viewer
Location:
chromosome: B10
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Araip1.1 (GCF_000816755.2) B10 NC_029794.2 (130583778..130589231)
100 previous assembly Araip1.0 (GCF_000816755.1) B10 NC_029794.1 (128275938..128281403, complement)

Chromosome B10 - NC_029794.2Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit 27 Neighboring gene receptor protein kinase TMK1 Neighboring gene aluminum-activated malate transporter 8-like Neighboring gene uncharacterized LOC110267633

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables digalactosyldiacylglycerol synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in galactolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
digalactosyldiacylglycerol synthase 1, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis ipaensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Araip1.1

Genomic

  1. NC_029794.2 Reference Araip1.1

    Range
    130583778..130589231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016324523.2 → XP_016180009.1  digalactosyldiacylglycerol synthase 1, chloroplastic

    Conserved Domains (1) summary
    PLN02501
    Location:6 → 798
    PLN02501; digalactosyldiacylglycerol synthase
Nucleotide Protein
Heading Accession and Version

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